Data and code associated with manuscript "Close-kin mark-recapture informs critically endangered terrestrial mammal status".

The data and files in these directories underpin the extension and application of close-kin mark-recapture (CKMR) to the critically endangered Christmas Island flying-fox. The data were generated over a set of collaborative projects between the Commonwealth Scientific and Industrial Research Organisation and the CIFF Ecology Team, which included members from West. Syd University, Taronga Zoo, Uni SA, and Parks Australia. The data were generated across two rounds of data generation and reporting, where round 1 was, in a sense, a pilot CKMR study that set the foundation for the generation of more genetic data in round 2. The primary data are SNP genotype data generated using the DArTSeq technology, mtDNA sequences in Fasta format, and the important covariate data gathered through field studies on CIFF. The data further accompany the manuscript "Lloyd-Jones, L et al. Close-kin mark-recapture informs critically endangered terrestrial mammal status", 2022". The results summarised in that manuscript appear in their raw form in this directory along with the scripts used to generate them.