A mobile tool for interactive visualisation of genomics data

Quang Vinh Nguyen, Zhonglin Qu, Mao Lin Huang, Chng Wei Lau, Simeon Simoff, Daniel R. Catchpoole

Research output: Chapter in Book / Conference PaperConference Paperpeer-review

2 Citations (Scopus)

Abstract

![CDATA[Advancement in genomic research and technology has significantly improved our understandings of biology, health, and medicine. Genomics data are very complex and contain genotype and phenotype information. Health researchers have long known that many diseases such as cancer are hereditary. Gaining insight and understanding of such data would enable a better understanding of the correlation between genes and diseases, which could facilitate personalised treatment for the patients. Visualisations have been increasingly used to break the complexity of genomics data to guide better decisions. Unfortunately, research works on interactive visualisations of the genomics data on mobile devices and immersive platforms are still limited. This paper presents a new interactive visualisation and navigation of genomics data on the mobile platform. The visualisation provides an overview of the entire patient cohort in a 3D similarity-space environment as well as 2D detail views of genes of interests. We introduce a new algorithm that enables effective touch-based interaction and exploration of large number of items on small mobile screens. We illustrate the effectiveness of our platform through a childhood cancer dataset, B-cell Acute Lymphoblastic Leukaemia (ALL) as well as a pilot qualitative study with the domain experts.]]
Original languageEnglish
Title of host publicationProceedings Ninth International Conference on Information Technology in Medicine and Education, ITME 2018, 19-21 October 2018, Hangzhou, Zhejiang, China
PublisherIEEE
Pages688-697
Number of pages10
ISBN (Print)9781538677438
DOIs
Publication statusPublished - 2018
EventInternational Conference on Information Technology in Medicine and Education -
Duration: 19 Oct 2018 → …

Conference

ConferenceInternational Conference on Information Technology in Medicine and Education
Period19/10/18 → …

Keywords

  • data processing
  • genomics
  • information visualization
  • leukemia
  • three-dimensional display systems

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