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Algebraic analysis of the computation in the Belousov-Zhabotinksy reaction

  • Paolo Dini
  • , Chrystopher L. Nehaniv
  • , Attila Egri-Nagy
  • , Maria J. Schilstra

    Research output: Contribution to journalArticlepeer-review

    2 Citations (Scopus)

    Abstract

    We analyse two very simple Petri nets inspired by the Oregonator model of the Belousov-Zhabotinsky reaction using our stochastic Petri net simulator. We then perform the Krohn-Rhodes holonomy decomposition of the automata derived from the Petri nets. The simplest case shows that the automaton can be expressed as a cascade of permutation-reset cyclic groups, with only 2 out of the 12 levels having only trivial permutations. The second case leads to a 35-level decomposition with 5 different simple non-abelian groups (SNAGs), the largest of which is A 9. Although the precise computational significance of these algebraic structures is not clear, the results suggest a correspondence between simple oscillations and cyclic groups, and the presence of SNAGs indicates that even extremely simple chemical systems may contain functionally complete algebras.
    Original languageEnglish
    Pages (from-to)216-224
    Number of pages9
    JournalLecture Notes in Computer Science
    Volume7223
    DOIs
    Publication statusPublished - 2012

    Keywords

    • Belousov, Zhabotinsky reactions
    • Oregonator model
    • Petri nets
    • algebra
    • data processing

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