spolTools : online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex

Chaka Tang; Josephine F. Reyes; Fabio Luciani; Andrew R. Francis; Mark M. Tanaka

doi:10.1093/bioinformatics/btn434

spolTools : online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex

Chaka Tang, Josephine F. Reyes, Fabio Luciani, Andrew R. Francis, Mark M. Tanaka

Research output: Contribution to journal › Article › peer-review

50 Citations (Scopus)

Abstract

spolTools is a collection of online programs designed to manipulate and analyze spoligotype datasets of the Mycobacterium tuberculosis complex. These tools are integrated into a repository currently containing 1179 spoligotypes and 6278 isolates across 30 datasets. Users can search this database to export for external use or to pass on to the integrated tools. These tools include the computation of basic population genetic quantities, the visualization of clusters of spoligotype patterns based on an estimated evolutionary history and a procedure to predict emerging strains - genotypes associated with elevated transmission.

Original language	English
Pages (from-to)	2414-2415
Number of pages	2
Journal	Bioinformatics
Volume	24
Issue number	20
DOIs	https://doi.org/10.1093/bioinformatics/btn434
Publication status	Published - 2008

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10.1093/bioinformatics/btn434

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abstract = "spolTools is a collection of online programs designed to manipulate and analyze spoligotype datasets of the Mycobacterium tuberculosis complex. These tools are integrated into a repository currently containing 1179 spoligotypes and 6278 isolates across 30 datasets. Users can search this database to export for external use or to pass on to the integrated tools. These tools include the computation of basic population genetic quantities, the visualization of clusters of spoligotype patterns based on an estimated evolutionary history and a procedure to predict emerging strains - genotypes associated with elevated transmission.",

author = "Chaka Tang and Reyes, {Josephine F.} and Fabio Luciani and Francis, {Andrew R.} and Tanaka, {Mark M.}",

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AU - Reyes, Josephine F.

AU - Luciani, Fabio

AU - Francis, Andrew R.

AU - Tanaka, Mark M.

PY - 2008

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AB - spolTools is a collection of online programs designed to manipulate and analyze spoligotype datasets of the Mycobacterium tuberculosis complex. These tools are integrated into a repository currently containing 1179 spoligotypes and 6278 isolates across 30 datasets. Users can search this database to export for external use or to pass on to the integrated tools. These tools include the computation of basic population genetic quantities, the visualization of clusters of spoligotype patterns based on an estimated evolutionary history and a procedure to predict emerging strains - genotypes associated with elevated transmission.

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ER -

spolTools : online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex

Abstract

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