The abundant fraction of soil microbiomes regulates the rhizosphere function in crop wild progenitors

Miguel de Celis; María José Fernández-Alonso; Ignacio Belda; Carlos García; Raúl Ochoa-Hueso; Javier Palomino; Brajesh K. Singh; Yue Yin; Jun Tao Wang; Luis Abdala-Roberts; Fernando D. Alfaro; Diego Angulo-Pérez; Manoj Kumar Arthikala; Jason Corwin; Duan Gui-Lan; Antonio Hernandez-Lopez; Kalpana Nanjareddy; Babak Pasari; Teresa Quijano-Medina; Daniela S. Rivera; Salar Shaaf; Pankaj Trivedi; Qingwen Yang; Eli Zaady; Yong Guan Zhu; Manuel Delgado-Baquerizo; Rubén Milla; Pablo García-Palacios

doi:10.1111/ele.14462

The abundant fraction of soil microbiomes regulates the rhizosphere function in crop wild progenitors

Miguel de Celis, María José Fernández-Alonso, Ignacio Belda, Carlos García, Raúl Ochoa-Hueso, Javier Palomino, Brajesh K. Singh, Yue Yin, Jun Tao Wang, Luis Abdala-Roberts, Fernando D. Alfaro, Diego Angulo-Pérez, Manoj Kumar Arthikala, Jason Corwin, Duan Gui-Lan, Antonio Hernandez-Lopez, Kalpana Nanjareddy, Babak Pasari, Teresa Quijano-Medina, Daniela S. RiveraSalar Shaaf, Pankaj Trivedi, Qingwen Yang, Eli Zaady, Yong Guan Zhu, Manuel Delgado-Baquerizo, Rubén Milla, Pablo García-Palacios

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Abstract

The rhizosphere influence on the soil microbiome and function of crop wild progenitors (CWPs) remains virtually unknown, despite its relevance to develop microbiome-oriented tools in sustainable agriculture. Here, we quantified the rhizosphere influence—a comparison between rhizosphere and bulk soil samples—on bacterial, fungal, protists and invertebrate communities and on soil multifunctionality across nine CWPs at their sites of origin. Overall, rhizosphere influence was higher for abundant taxa across the four microbial groups and had a positive influence on rhizosphere soil organic C and nutrient contents compared to bulk soils. The rhizosphere influence on abundant soil microbiomes was more important for soil multifunctionality than rare taxa and environmental conditions. Our results are a starting point towards the use of CWPs for rhizosphere engineering in modern crops.

Original language	English
Article number	e14462
Number of pages	14
Journal	Ecology Letters
Volume	27
Issue number	6
DOIs	https://doi.org/10.1111/ele.14462
Publication status	Published - Jun 2024

Bibliographical note

Publisher Copyright:
© 2024 The Author(s). Ecology Letters published by John Wiley & Sons Ltd.

Keywords

abundant and rare taxa
crop wild progenitors
plant domestication
plant–soil interactions
rhizosphere
soil biodiversity
soil multifunctionality

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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de Celis, M., Fernández-Alonso, M. J., Belda, I., García, C., Ochoa-Hueso, R., Palomino, J., Singh, B. K., Yin, Y., Wang, J. T., Abdala-Roberts, L., Alfaro, F. D., Angulo-Pérez, D., Arthikala, M. K., Corwin, J., Gui-Lan, D., Hernandez-Lopez, A., Nanjareddy, K., Pasari, B., Quijano-Medina, T., ... García-Palacios, P. (2024). The abundant fraction of soil microbiomes regulates the rhizosphere function in crop wild progenitors. Ecology Letters, 27(6), Article e14462. https://doi.org/10.1111/ele.14462

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title = "The abundant fraction of soil microbiomes regulates the rhizosphere function in crop wild progenitors",

abstract = "The rhizosphere influence on the soil microbiome and function of crop wild progenitors (CWPs) remains virtually unknown, despite its relevance to develop microbiome-oriented tools in sustainable agriculture. Here, we quantified the rhizosphere influence—a comparison between rhizosphere and bulk soil samples—on bacterial, fungal, protists and invertebrate communities and on soil multifunctionality across nine CWPs at their sites of origin. Overall, rhizosphere influence was higher for abundant taxa across the four microbial groups and had a positive influence on rhizosphere soil organic C and nutrient contents compared to bulk soils. The rhizosphere influence on abundant soil microbiomes was more important for soil multifunctionality than rare taxa and environmental conditions. Our results are a starting point towards the use of CWPs for rhizosphere engineering in modern crops.",

keywords = "abundant and rare taxa, crop wild progenitors, plant domestication, plant–soil interactions, rhizosphere, soil biodiversity, soil multifunctionality",

author = "{de Celis}, Miguel and Fern{\'a}ndez-Alonso, {Mar{\'i}a Jos{\'e}} and Ignacio Belda and Carlos Garc{\'i}a and Ra{\'u}l Ochoa-Hueso and Javier Palomino and Singh, {Brajesh K.} and Yue Yin and Wang, {Jun Tao} and Luis Abdala-Roberts and Alfaro, {Fernando D.} and Diego Angulo-P{\'e}rez and Arthikala, {Manoj Kumar} and Jason Corwin and Duan Gui-Lan and Antonio Hernandez-Lopez and Kalpana Nanjareddy and Babak Pasari and Teresa Quijano-Medina and Rivera, {Daniela S.} and Salar Shaaf and Pankaj Trivedi and Qingwen Yang and Eli Zaady and Zhu, {Yong Guan} and Manuel Delgado-Baquerizo and Rub{\'e}n Milla and Pablo Garc{\'i}a-Palacios",

note = "Publisher Copyright: {\textcopyright} 2024 The Author(s). Ecology Letters published by John Wiley & Sons Ltd.",

year = "2024",

month = jun,

doi = "10.1111/ele.14462",

language = "English",

volume = "27",

journal = "Ecology Letters",

issn = "1461-023X",

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de Celis, M, Fernández-Alonso, MJ, Belda, I, García, C, Ochoa-Hueso, R, Palomino, J, Singh, BK, Yin, Y, Wang, JT, Abdala-Roberts, L, Alfaro, FD, Angulo-Pérez, D, Arthikala, MK, Corwin, J, Gui-Lan, D, Hernandez-Lopez, A, Nanjareddy, K, Pasari, B, Quijano-Medina, T, Rivera, DS, Shaaf, S, Trivedi, P, Yang, Q, Zaady, E, Zhu, YG, Delgado-Baquerizo, M, Milla, R & García-Palacios, P 2024, 'The abundant fraction of soil microbiomes regulates the rhizosphere function in crop wild progenitors', Ecology Letters, vol. 27, no. 6, e14462. https://doi.org/10.1111/ele.14462

TY - JOUR

T1 - The abundant fraction of soil microbiomes regulates the rhizosphere function in crop wild progenitors

AU - de Celis, Miguel

AU - Fernández-Alonso, María José

AU - Belda, Ignacio

AU - García, Carlos

AU - Ochoa-Hueso, Raúl

AU - Palomino, Javier

AU - Singh, Brajesh K.

AU - Yin, Yue

AU - Wang, Jun Tao

AU - Abdala-Roberts, Luis

AU - Alfaro, Fernando D.

AU - Angulo-Pérez, Diego

AU - Arthikala, Manoj Kumar

AU - Corwin, Jason

AU - Gui-Lan, Duan

AU - Hernandez-Lopez, Antonio

AU - Nanjareddy, Kalpana

AU - Pasari, Babak

AU - Quijano-Medina, Teresa

AU - Rivera, Daniela S.

AU - Shaaf, Salar

AU - Trivedi, Pankaj

AU - Yang, Qingwen

AU - Zaady, Eli

AU - Zhu, Yong Guan

AU - Delgado-Baquerizo, Manuel

AU - Milla, Rubén

AU - García-Palacios, Pablo

PY - 2024/6

Y1 - 2024/6

N2 - The rhizosphere influence on the soil microbiome and function of crop wild progenitors (CWPs) remains virtually unknown, despite its relevance to develop microbiome-oriented tools in sustainable agriculture. Here, we quantified the rhizosphere influence—a comparison between rhizosphere and bulk soil samples—on bacterial, fungal, protists and invertebrate communities and on soil multifunctionality across nine CWPs at their sites of origin. Overall, rhizosphere influence was higher for abundant taxa across the four microbial groups and had a positive influence on rhizosphere soil organic C and nutrient contents compared to bulk soils. The rhizosphere influence on abundant soil microbiomes was more important for soil multifunctionality than rare taxa and environmental conditions. Our results are a starting point towards the use of CWPs for rhizosphere engineering in modern crops.

AB - The rhizosphere influence on the soil microbiome and function of crop wild progenitors (CWPs) remains virtually unknown, despite its relevance to develop microbiome-oriented tools in sustainable agriculture. Here, we quantified the rhizosphere influence—a comparison between rhizosphere and bulk soil samples—on bacterial, fungal, protists and invertebrate communities and on soil multifunctionality across nine CWPs at their sites of origin. Overall, rhizosphere influence was higher for abundant taxa across the four microbial groups and had a positive influence on rhizosphere soil organic C and nutrient contents compared to bulk soils. The rhizosphere influence on abundant soil microbiomes was more important for soil multifunctionality than rare taxa and environmental conditions. Our results are a starting point towards the use of CWPs for rhizosphere engineering in modern crops.

KW - abundant and rare taxa

KW - crop wild progenitors

KW - plant domestication

KW - plant–soil interactions

KW - rhizosphere

KW - soil biodiversity

KW - soil multifunctionality

UR - http://www.scopus.com/inward/record.url?scp=85196532332&partnerID=8YFLogxK

U2 - 10.1111/ele.14462

DO - 10.1111/ele.14462

M3 - Article

C2 - 39031813

AN - SCOPUS:85196532332

SN - 1461-023X

VL - 27

JO - Ecology Letters

JF - Ecology Letters

IS - 6

M1 - e14462

ER -

The abundant fraction of soil microbiomes regulates the rhizosphere function in crop wild progenitors

Abstract

Bibliographical note

Keywords

UN SDGs

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