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The potential of wheat spatial omics

  • Xiao Yuan Tao
  • , Cong Tan
  • , Yifan Liu
  • , Yuanyuan Wang
  • , Ali Raza
  • , Jing He
  • , Lulu Wang
  • , Keke Xia
  • , Yan Yan
  • , Sha Liao
  • , Wei Jiang
  • , Yue Qu
  • , Bo Xu
  • , Yi Zhou
  • , Xiujuan Yang
  • , Stuart Roy
  • , Matthew Denton
  • , Matthew Tucker
  • , Jason Able
  • , Matthew Gilliham
  • Peter Langridge, Hang Wei Hu, Ji Zheng He, Chenchen Zhao, Meixue Zhou, Reyazul Rouf Mir, Annapurna Chitikineni, Chengdao Li, Peng Zhang, Richard Trethowan, Yi Ding, Jianping Zhang, Peter Franks, Qiuhong Wu, Lingzhen Ye, Yizhou Wang, Feibo Wu, Guoping Zhang, Shengguan Cai, Qiufang Shen, Hangjin Jiang, Guang Chen, Yun Zhou, Chunpeng Song, Yumei Zhang, Wujun Ma, Ximei Li, Weiwei Guo, Jianbin Zeng, Xiaoyan He, Wenxing Liu, Xue Feng, Rongzhi Zhang, Genying Li, Xinyou Cao, Shubing Liu, Qier Liu, Jiansheng Chen, Xueyong Zhang, Luxiang Liu, Fanrong Zeng, Fenglin Deng, Yuan Qin, Xiangqian Zhu, Sergey Shabala, Estee E. Tee, Thorsten Schnurbusch, Martin Mascher, Honghong Wu, Manuel Spannagl, Mingming Xin, Jinying Gou, Gurcharn Brar, Dawei Xue, Wei Wang, Matthew Reynolds, Yusheng Zhao, Zhiyong Liu, Tamar Krugman, Yoichi Sakata, Suyan Yee, Kai Chan, Barry Pogson, Yijing Zhang, D. Blaine Marchant, Kadambot H.M. Siddique, Xiaodong Fang, Ao Chen, Robert Henry, Scott A. Boden, Rajeev K. Varshney, Sheng Chun Xu, Xun Xu, Zhong Hua Chen
  • Xianghu Laboratory
  • BGI Research
  • Adelaide University
  • Shenzhen University
  • University of Melbourne
  • University of Tasmania
  • Murdoch University
  • Sher-e-Kashmir University of Agricultural Sciences and Technology of Jammu
  • The University of Sydney
  • Zhejiang University
  • Institute of Nanfan & Seed Industry, Guangdong Academy of Sciences
  • Henan University
  • Qingdao Agricultural University
  • Shandong Academy of Agricultural Sciences
  • Shandong Agricultural University
  • Chinese Academy of Agricultural Sciences
  • Yangtze University
  • University of Western Australia
  • John Innes Centre
  • Leibniz Institute of Plant Genetics and Crop Plant Research
  • Huazhong Agricultural University
  • Helmholtz Zentrum München - German Research Center for Environmental Health
  • China Agricultural University
  • University of Alberta
  • Hangzhou Normal University
  • Nanjing Agricultural University
  • International Centre for Wheat and Maize Improvement
  • Chinese Academy of Sciences
  • University of Haifa
  • Tokyo University of Agriculture
  • Australian National University
  • Fudan University
  • University of Missouri at St. Louis
  • Jinfeng Laboratory
  • University of Queensland

Research output: Contribution to journalReview articlepeer-review

Abstract

Wheat is a major staple crop for over one-third of the world’s population, crucial for global food security, economic stability and cultural traditions. Recently, single-cell and spatial omics approaches have transformed biological discovery, primarily in medical and animal sciences, and they are now beginning to be applied in plant research. Here we summarize the technical innovations and feasibility of spatial omics applications in wheat research, particularly for understanding developmental and environmental responses, thereby potentially enhancing wheat breeding. We highlight how these tools can reveal spatial and temporal patterns in gene expression, cellular heterogeneity and tissue organization in wheat. Furthermore, we propose developing a spatially resolved single-cell atlas of wheat across its life cycle to facilitate breakthroughs in basic research and potential applications in breeding. To achieve these goals, we advocate for a Wheat Spatial Omics Consortium to foster worldwide collaboration for overcoming barriers and developing sustainable and climate-resilient wheat.

Original languageEnglish
JournalNature Genetics
DOIs
Publication statusE-pub ahead of print (In Press) - 2026
Externally publishedYes

Bibliographical note

Publisher Copyright:
© Springer Nature America, Inc. 2026.

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