Using GenBankÂ® for genomic authentication : a tutorial

James R. Hennell; Paul M. D'Agostino; Samiuela Lee; Cheang S. Khoo; Nikolaus J. Sucher

doi:10.1007/978-1-61779-609-8_15

Using GenBankÂ® for genomic authentication : a tutorial

James R. Hennell, Paul M. D'Agostino, Samiuela Lee, Cheang S. Khoo, Nikolaus J. Sucher

Research output: Contribution to journal › Article › peer-review

11 Citations (Scopus)

Abstract

The GenBankÂ® database is perhaps one of the most important repositories of genetic information. A researcher working in the field of genomic authentication must therefore be equipped with the skills needed to competently access the required information from this database whilst ultimately contributing their own data to it. This chapter presents a practical guide to using GenBankÂ® to search for sequences, search and align unknown sequences using BLAST, and uploading and maintaining your own sequences. This chapter also details some other software helpful in sequence manipulation.

Original language	English
Pages (from-to)	181-200
Number of pages	20
Journal	Methods in Molecular Biology
Volume	862
DOIs	https://doi.org/10.1007/978-1-61779-609-8_15
Publication status	Published - 2012

Keywords

BLAST
BankIt
GenBank
Sequin
genome
nucleic acid database

Access to Document

10.1007/978-1-61779-609-8_15

Cite this

@article{4be6f8d6d1584a89a0c7221225355707,

title = "Using GenBank{\^A}{\textregistered} for genomic authentication : a tutorial",

abstract = "The GenBank{\^A}{\textregistered} database is perhaps one of the most important repositories of genetic information. A researcher working in the field of genomic authentication must therefore be equipped with the skills needed to competently access the required information from this database whilst ultimately contributing their own data to it. This chapter presents a practical guide to using GenBank{\^A}{\textregistered} to search for sequences, search and align unknown sequences using BLAST, and uploading and maintaining your own sequences. This chapter also details some other software helpful in sequence manipulation.",

keywords = "BLAST, BankIt, GenBank, Sequin, genome, nucleic acid database",

author = "Hennell, {James R.} and D'Agostino, {Paul M.} and Samiuela Lee and Khoo, {Cheang S.} and Sucher, {Nikolaus J.}",

year = "2012",

doi = "10.1007/978-1-61779-609-8_15",

language = "English",

volume = "862",

pages = "181--200",

journal = "Methods in Molecular Biology",

issn = "1064-3745",

publisher = "Humana Press ",

}

TY - JOUR

T1 - Using GenBankÂ® for genomic authentication : a tutorial

AU - Hennell, James R.

AU - D'Agostino, Paul M.

AU - Lee, Samiuela

AU - Khoo, Cheang S.

AU - Sucher, Nikolaus J.

PY - 2012

Y1 - 2012

N2 - The GenBankÂ® database is perhaps one of the most important repositories of genetic information. A researcher working in the field of genomic authentication must therefore be equipped with the skills needed to competently access the required information from this database whilst ultimately contributing their own data to it. This chapter presents a practical guide to using GenBankÂ® to search for sequences, search and align unknown sequences using BLAST, and uploading and maintaining your own sequences. This chapter also details some other software helpful in sequence manipulation.

AB - The GenBankÂ® database is perhaps one of the most important repositories of genetic information. A researcher working in the field of genomic authentication must therefore be equipped with the skills needed to competently access the required information from this database whilst ultimately contributing their own data to it. This chapter presents a practical guide to using GenBankÂ® to search for sequences, search and align unknown sequences using BLAST, and uploading and maintaining your own sequences. This chapter also details some other software helpful in sequence manipulation.

KW - BLAST

KW - BankIt

KW - GenBank

KW - Sequin

KW - genome

KW - nucleic acid database

UR - http://handle.uws.edu.au:8081/1959.7/518098

U2 - 10.1007/978-1-61779-609-8_15

DO - 10.1007/978-1-61779-609-8_15

M3 - Article

SN - 1064-3745

VL - 862

SP - 181

EP - 200

JO - Methods in Molecular Biology

JF - Methods in Molecular Biology

ER -

Using GenBankÂ® for genomic authentication : a tutorial

Abstract

Keywords

Access to Document

Other files and links

Fingerprint

Cite this